Question

protein domain download

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9.7 years ago

siyu ▴ 150

where can I download the protein domain included in a gene set? can you help me

gene • 2.8k views

ADD COMMENT • link updated 2.4 years ago by Ram 43k • written 9.7 years ago by siyu ▴ 150

Ram · Answer 1 · 2014-08-13

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9.7 years ago

mikhail.shugay 3.5k

Try using InterPro @ Ensembl biomart (http://www.ensembl.org/biomart/). Upload your list of genes as filter and select desired protein feature attributes.

(edit: corrected link)

ADD COMMENT • link 9.7 years ago by mikhail.shugay 3.5k

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so how can I find the position of domain in a protein sequence??

ADD REPLY • link 9.7 years ago by siyu ▴ 150

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You can upload your domains to http://www.ebi.ac.uk/interpro/biomart/martview/ and extract parent gene id and amino acid coordinates.

ADD REPLY • link updated 2.4 years ago by Ram 43k • written 9.7 years ago by mikhail.shugay 3.5k