Question: EXCAVATOR error - Missing F4R.so file
0
gravatar for matthew.1.davies
4.7 years ago by
United Kingdom
matthew.1.davies20 wrote:

Hi 

 

I'm trying to run EXCAVATOR but I get the following error.

 

Error in dyn.load(paste(Program_Folder, "/lib/F77/F4R.so", sep = "")) : 

  unable to load shared object '/scratch/molcarc/mdavies/colrec/EXCAVATOR/EXCAVATOR_Package_v2.2/EXCAVATOR/lib/F77/F4R.so':

  /scratch/molcarc/mdavies/colrec/EXCAVATOR/EXCAVATOR_Package_v2.2/EXCAVATOR/lib/F77/F4R.so: cannot open shared object file: No such file or directory

 

The file (presumably a shared library file) is called by the MakeReadCount.R and NeoMap.R scripts

 

dyn.load(paste(Program_Folder,"/lib/F77/F4R.so",sep=""))

 

but I can't find it in either version of the program. Can anyone suggest where I'm going wrong?

 

Many thanks

Matt

 

 

excavator cnv fortran .so • 1.4k views
ADD COMMENTlink modified 4.5 years ago by alison.meynert0 • written 4.7 years ago by matthew.1.davies20
0
gravatar for alison.meynert
4.5 years ago by
United Kingdom
alison.meynert0 wrote:

I ran into the same problem just now. It seems to be due to using a new version of R. Try re-compiling the two Fortran libraries.

cd $EXCAVATOR_HOME/lib/F77

rm *.so *.o

R CMD SHLIB F4R.f

R CMD SHLIB FastJointSLMLibraryI.f 

 

ADD COMMENTlink written 4.5 years ago by alison.meynert0
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