Question: SVDetect - Circos configuration file
gravatar for stefan.mester
4.4 years ago by
stefan.mester0 wrote:


I want to use SVDetect for CNV discovery in WGS data. I have executed the SVDetect cnv -conf command and gotten a filename.density output (6 column as expected). Then I performed the SVDetect ratio2circos -conf command and gotten my filename.density.segdup.txt output (4 columns as expected). 

For running Circos, I have spent a couple of hours trying to lern how to create the configuration files, but looks rather complex to me. If I want to visualize my SVDetect outcomes via Circos, Do I need to write the circus configuration file manually myself?

Thanks a lot for you help ;)



next-gen software error • 1.6k views
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