I have a list of SNPs associated with breast cancer(BRCA).
I'm trying to find the number of risky or risk alleles for each SNP of each patient.
What kinds of data do I have to download?
Here are the list of data types supplied by TCGA:
https://tcga-data.nci.nih.gov/tcga/tcgaDataType.jsp (please click on "Expand All" to see the whole data types)