Question: Problem downloading Mouse databases in ANNOVAR
1
gravatar for fenguita
4.6 years ago by
fenguita10
Portugal
fenguita10 wrote:

Dear All

I am trying to use Annovar for annotating SNPs in mouse. I have installed Annovar, and when I try to download the mouse databases, I got an annoying error message saying that the software was not able to download anything. What I am doing wrong ?. Any clues?... By the way, the same procedure work fine when I download the human data. Thanks.

Command:  ./annotate_variation.pl -downdb -buildver mm9 -webfrom annovar refGene mousedb/

NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/mm9_refGene.txt.gz ... Failed
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/mm9_refLink.txt.gz ... Failed
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/mm9_refGeneMrna.fa.gz ... Failed
WARNING: Some files cannot be downloaded, including http://www.openbioinformatics.org/annovar/download/mm9_refLink.txt.gz, http://www.openbioinformatics.org/annovar/download/mm9_refGene.txt.gz, http://www.openbioinformatics.org/annovar/download/mm9_refGeneMrna.fa.gz

next-gen exome • 2.4k views
ADD COMMENTlink modified 4.5 years ago by Biostar ♦♦ 20 • written 4.6 years ago by fenguita10

I think somehow the link was dead (if you type that link on a browser, you can see the page not found error)

Unfortunately I couldn't find the correct link, or else you should be able to use that directly.

 

ADD REPLYlink written 4.6 years ago by Sam2.3k
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