Question: Does Hapmap2 Have Overlap With 1Kg?
gravatar for Ardmore
7.8 years ago by
Ardmore140 wrote:

Does HAPMAP2 have overlap with 1KG? Or can we merge them together? I mean genotype.

hapmap genome • 1.5k views
ADD COMMENTlink modified 15 months ago by Biostar ♦♦ 20 • written 7.8 years ago by Ardmore140
gravatar for Sander Timmer
7.8 years ago by
Sander Timmer700
United Kingdom
Sander Timmer700 wrote:

Depends on the population you're interested in, but simply said, yes there is overlap to some extend between the HapMap samples and the 1000 Genomes samples.

I know that for the CEU samples there is a mis-match between the HapMap genotypes and the latest 1000 Genomes release. Though, for the CEU samples the idea is to get the missing ones sequenced within the 1000 genomes on a later stage as well (depending on sample quality etc).

As for the merging I don't really understand what you mean. The 1000 genomes genotypes is actually a superset of the hapmap genotypes. So genotypes called in hapmap are also called in the 1000 genomes so there is not much to merge (or do I mis interpret your "merge" question?).

ADD COMMENTlink written 7.8 years ago by Sander Timmer700
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 972 users visited in the last hour