Question: Can I download 16s rDNA sequencing results from a database?
0
gravatar for lewisbatmanarnold
3.7 years ago by
United States
lewisbatmanarnold0 wrote:

Is there any database can offer 16s rDNA sequencing results?

I'm going to deal wtih 16s rDNA sequence results. As sequencing results will be send to me in a month, I want to learn results analysis with other researchers' results which have been published. So from which database I can download others' 16s rDNA sequnencing results.

Thanks for your help!

database sequence 16s rdna • 1.2k views
ADD COMMENTlink modified 20 months ago by Biostar ♦♦ 20 • written 3.7 years ago by lewisbatmanarnold0
0
gravatar for khorms
3.7 years ago by
khorms30
Moscow
khorms30 wrote:

There are a lot of 16S sequense data at MG RAST server. For each metagenome sample there is download page (for example http://metagenomics.anl.gov/metagenomics.cgi?page=DownloadMetagenome&metagenome=4489926.3 where 4489926.3 is sample id) where you can get it. And for each project there is a list of id of samples... (http://metagenomics.anl.gov/?page=MetagenomeProject&project=401)

ADD COMMENTlink written 3.7 years ago by khorms30
0
gravatar for Skeletor
3.7 years ago by
Skeletor90
Calgary, Alberta Canada
Skeletor90 wrote:

I'd recommend working through the Mothur tutorial (they provide the data as well):

http://www.mothur.org/wiki/MiSeq_SOP

The Sequence Read Archive has a ton of data:

http://www.ncbi.nlm.nih.gov/sra

ADD COMMENTlink written 3.7 years ago by Skeletor90
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