Entering edit mode
9.5 years ago
niu2rseq
▴
90
Hi,
I am trying to download the bacterial genome collection from NCBI ftp to blast against with my metatranscriptome data.
I am now watching this folder:
ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/
I am not sure which file to download and no detail description was provided in the readme.txt.
all.Glimmer3.tar.gz 119 MB 10/31/14, 7:08:00 AM
all.Prodigal.tar.gz 265 MB 10/31/14, 10:18:00 AM
all.asn.tar.gz 1.1 GB 10/31/14, 7:15:00 AM
all.faa.tar.gz 1.7 GB 10/31/14, 7:22:00 AM
all.ffn.tar.gz 2.5 GB 10/31/14, 7:30:00 AM
all.fna.tar.gz 2.7 GB 10/31/14, 8:09:00 AM
all.frn.tar.gz 8.8 MB 10/31/14, 8:52:00 AM
all.gbk.tar.gz 7.6 GB 10/31/14, 8:59:00 AM
all.gff.tar.gz 614 MB 10/31/14, 10:02:00 AM
all.ptt.tar.gz 210 MB 10/31/14, 10:05:00 AM
all.rnt.tar.gz 3.0 MB 10/31/14, 10:06:00 AM
all.rpt.tar.gz 413 kB 10/31/14, 10:07:00 AM
all.val.tar.gz 926 MB 10/31/14, 10:11:00 AM
I appreciate your comments and suggestions! Thank you!
Thank you RamRS! Two more questions:
There is no collection file to contain everything, so what file I should download from each folder?
Thanks!
Googling "XYZ format" should help with the file formats. You might wanna make Qn 2 a new post.