building a phylogenetic tree with antibody protein sequences
0
2
Entering edit mode
7.1 years ago

Hi

I am trying to build a phylogenic tree with antibody protein sequences. The data I got are the same antibody sequences of various cells. The consequence is that there are mutation in the sequences. I want to compare it to the germline and create a tree to visualize the divergence between the sequences and the germline. Is there any software were I can input the protein sequences and germline to see the divergence to get a phylogenic tree? 

Thanks!

antibody phylogenic tree • 2.7k views
ADD COMMENT
0
Entering edit mode

I've heard about the IgTree software with almost the same functionality as you've described. Still I haven't found a link to download it :)

ADD REPLY
0
Entering edit mode

Thanks!!! its exactly what I was looking for. Unfortunately I could not find a download as well.

ADD REPLY
0
Entering edit mode

You can access the IgTree under MTA, you will have to send a request to senior author of the IgTree paper to get the tool..

ADD REPLY

Login before adding your answer.

Traffic: 2425 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6