Question: how to read gene expression RNA seq
1
gravatar for Am.A
5.0 years ago by
Am.A20
SA
Am.A20 wrote:

I am familiar with gene expression (microarray data) now I want to explore gene expression of RNA-seq

What are numbers means? Is there a site that I can download gene expression for RNA seq?  

what is the difference between gene expression for mircoarray and RNA-seq?

 

rna-seq • 2.6k views
ADD COMMENTlink modified 5.0 years ago by Ahill1.6k • written 5.0 years ago by Am.A20
2
gravatar for Manvendra Singh
5.0 years ago by
Manvendra Singh2.1k
Berlin, Germany
Manvendra Singh2.1k wrote:

I think you need to read some reviews, they would be very very useful , because in one sentence or in one post , can't describe everything

here are some useful links, I think others would also suggest some nice literatures

http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html

http://www.ncbi.nlm.nih.gov/pubmed/21627854

http://bioinformatics.oxfordjournals.org/content/25/12/1476.full

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4152252/

and this one

http://www.sciencemag.org/content/320/5881/1344

 

 

ADD COMMENTlink written 5.0 years ago by Manvendra Singh2.1k
0
gravatar for Ahill
5.0 years ago by
Ahill1.6k
United States
Ahill1.6k wrote:

I'd also recommend looking at SEQC's recent paper which does an extensive comparison of microarray and RNASeq:

http://www.nature.com/nbt/journal/v32/n9/full/nbt.2957.html

As for sites where you can access RNA-Seq data, SRA would be one place:

http://www.ncbi.nlm.nih.gov/sra

 

 

 

 

ADD COMMENTlink written 5.0 years ago by Ahill1.6k
Thank you for your reply Could you please describe more how to download RNA seq gene expression data?
ADD REPLYlink written 5.0 years ago by Am.A20

You can get data frrom NCBI or ENCODE, just filter by RNA-seq. https://www.encodeproject.org/matrix/?type=Experiment&status=released

ADD REPLYlink written 2.7 years ago by Zuzu0
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