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8.4 years ago
jack ▴ 960
I have transcriptome expression profile of an organism with some biological replicates in different conditions. I want to visualize the transcriptome expression similarity in different conditions in one heatmap.
Does anyone have idea how can I do that ? which metrics should I compute?
See links here: How To Draw A Heat Map For Gene Expression Data?
you will need to compute pearson correlation and plot with heatmap.2
See code here: https://github.com/crazyhottommy/NGS-scripts/blob/master/DESeq_MCF7_hypoxia_RNA-seq.r