Question: Quick way to find all the TFBS peak data for mouse and Human in GEO
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gravatar for Saad Khan
4.9 years ago by
Saad Khan370
United States
Saad Khan370 wrote:

Does any body know a quick way to summarize all the TFBS peak data available in GEO and for which all tissues is it available in human and mouse along with their GEO accessions.

 

thanks

ucsc tfbs geo peak • 1.4k views
ADD COMMENTlink modified 4.9 years ago by Biostar ♦♦ 20 • written 4.9 years ago by Saad Khan370

you better do some googling first. here is the post where it already has been asked Database For Transcription Factor Binding Sites Annotation (Tfbs)

ADD REPLYlink modified 4.9 years ago • written 4.9 years ago by biorepine1.4k

That post does not talks about GEO accessions. What I wanted to know is the summary of TF peaks data. For which all tissues is it available and what are their respective accessions. I am talking more along the lines of fetching NCBI GEO data from E-utils and getting the summary. But since we all know that E-utils can be a little buggy I wanted to know if somebody has already done it and a script like that already exists.

 

ADD REPLYlink written 4.9 years ago by Saad Khan370
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