I'm doing copy number variation analysis using next-generation sequencing right now. I need kind of standard CNV(say, for NA12878) as control, to see if my own algorithm works or not.
It seems from 1000 genome project, different groups have identified CNVs for human genome using distinctive algorithms.See paper below:
I read the paper and also attached supplementary table. The table lists all CNV calls by different groups. But I don't see a standard CNV lists based on the previous work using these various algorithms.
So is there such a standard? Or I could try to make one standard out of the previous work, using tools like bedtools?