I have been using the novoalign to align short reads. So far I have been using the native output of the
novoalign for all of my work. But now I need to do something for which there are better and elegant tools available from the community. I would like to harness this collective intelligence in my work. But my bottle-neck is in converting the native
novoalign output to SAM/BAM. Is there a simple way to do this?