Human Genome Files
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11.2 years ago
Ethan • 0

Is there a database where I can find .bam files of human genomes NOT included in the 1000 genome project? For example, I believe the aboriginal genome was recently sequenced, but I cannot find the sequence file.

bam genome genome • 2.3k views
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11.2 years ago
Neilfws 49k

Regarding the aboriginal sequence: it was published in Science, so you cannot expect much attention to be paid to trifling aspects such as data sharing ;)

However - if you read the supplementary material (PDF), you will find details of sequencing, alignment and genotyping and the sentence:

The alignment (BAM) files for hg18 and GRCh37 are available at https://www.cbs.dtu.dk/projects/AboriginalAustralian/

In general, individual labs often maintain their own databases; there is no single database containing "not 1000 genomes" data. Best way to find them is to read the associated publication carefully.

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11.2 years ago
Rubal ▴ 350

Yes, try writing to groups that have published work on human genome data and they should (by law I believe) tell you where you can find the data they analyzed.

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