Entering edit mode
9.3 years ago
Macho
•
0
Hello, I'm testing this program:
SALT - Sensitive and accurate protein domain classification for short reads
After installation, I need to introduce the follow code to run the program:
./SALT.sh -m <HMMER3 HMM file> -f <fasta file>
The problem comes with the <HMMER3 HMM file>
, what is exactly that file? The mini instructions say
The hmm file can contain multiple hmm models and should be in HMMER3.0's hmm file format. These files can be downloaded from Pfam ftp.
Of course I was in Pfam ftp, but I don't know which file/s is needed to be downloaded. Any idea?
Thanks in advance.