SALT. Protein domain classification tool.
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Entering edit mode
6.3 years ago
Macho • 0

Hello, Im testing this program:

SALT

Sensitive and accurate protein domain classification for short reads

http://sourceforge.net/projects/salt1/files/

After installation, I need to introduce the follow code to run the program:

./SALT.sh -m <HMMER3 HMM file> -f <fasta file>

The problem comes with the <HMMER3 HMM file> , what is exactly that file? The mini instructions say the next: "The hmm file can contain multiple hmm models and should be in HMMER3.0's hmm file format. These files can be downloaded from Pfam ftp."

Of course I was in Pfam ftp, but I don't know which file/s is needed to be downloaded.  Any idea?

Thanks in advance.

sequence next-gen • 1.5k views
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