Hello, Im testing this program:
Sensitive and accurate protein domain classification for short reads
After installation, I need to introduce the follow code to run the program:
./SALT.sh -m <HMMER3 HMM file> -f <fasta file>
The problem comes with the <HMMER3 HMM file> , what is exactly that file? The mini instructions say the next: "The hmm file can contain multiple hmm models and should be in HMMER3.0's hmm file format. These files can be downloaded from Pfam ftp."
Of course I was in Pfam ftp, but I don't know which file/s is needed to be downloaded. Any idea?
Thanks in advance.