Question: GEO datasets for the eqtl analysis
0
gravatar for P.NJ
4.3 years ago by
P.NJ50
Germany
P.NJ50 wrote:

Hello,

How can I extract all datasets from GEO relating to Alzheimer's samples from GEO for eqtl analysis ?

 

Thank you

eqtl extract geo • 1.6k views
ADD COMMENTlink written 4.3 years ago by P.NJ50

Have you found datasets for which you have access to the SNP data (dbGaP data access) and that also have associated gene expression data?  Just note that GEO does not have SNP data for human subjects (largely).  

ADD REPLYlink written 4.3 years ago by Sean Davis25k

no I do not have access to dbGAP, I am using eqtl datasets available online

ADD REPLYlink written 4.3 years ago by P.NJ50
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