Entering edit mode
9.3 years ago
vishweshwaransridhar
▴
10
Hi,
I get the following error when trying to do a DE analysis
/trinityrnaseq_r20140413/Analysis/DifferentialExpression/analyze_diff_expr.pl --matrix Trinity_trans.TMM.fpkm.matrix -P 1e-3 -C 2
Error, not finding replicates corresponding to cond: RSEM. Please use the --samples parameter to specify sample/replicate relationships
$VAR1 = {
'leaf.RSEM' => [
'leaf.RSEM'
],
'leaf_trichome.RSEM' => [
'leaf_trichome.RSEM'
],
'root.RSEM' => [
'root.RSEM'
],
'trichome.RSEM' => [
'trichome.RSEM'
]
};
Please let me know how to solve this. What should be the sample file format?
Regards
Vishwesh