Question

Bsmap methylation on Hadoop

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9.3 years ago

shalini.ravishankar • 0

Hello Everyone, Can someone give me some insights on how to do bsmap methylation extraction on human genome data using hadoop cluster??

bsmap methylation hadoop human genome • 1.8k views

ADD COMMENT • link updated 9.3 years ago by Devon Ryan 104k • written 9.3 years ago by shalini.ravishankar • 0

score 0 · Answer 1 · 2015-01-15

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9.3 years ago

Devon Ryan 104k

The simplest method would be to just run each chromosome (or a part thereof, depending on how many cores you have, how the data is stored, etc.) on a separate core somewhere on the cluster. This actually has nothing to do with hadoop other than the fact that the cluster is likely using it for file storage.

ADD COMMENT • link 9.3 years ago by Devon Ryan 104k

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Yeah. You are correct but I am wondering is there a way to do this using Hadoop.

ADD REPLY • link 9.3 years ago by shalini.ravishankar • 0

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If you want to write the code to do it, then pretty much anything is possible :)

ADD REPLY • link 9.3 years ago by Devon Ryan 104k