Hello,
I would like to use the GATB library for creating a Bloom filter for k-mers. Please, could you have a look on this code and recommend me what should I correct?
http://pastebin.com/8vgiTTjx
I am currently getting this error:
http://pastebin.com/MFWyWamx
Thanks!
Hello,
The issue is indeed on line 19 when you try to insert an item in the Bloom filter.
Actually, the 'kmer' object (of class ModelDirect::Kmer) is not of type Type (which is only the numerical value of the kmer); it holds several methods, including an accessor value() to the actual numerical value of the kmer.
So, the correction of your code should be:
bloom->insert (kmer.value());
Can you tell me if it works ?
Great, it works. Thank you!!! Btw. it seems that the method contains for Bloom is not const. Is there any reason for it?
