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• looking for chip-seq histone marks and rna-seq data
  Hello, I wonder if there is public available data for ChIP-seq for histone marks and RNAseq data ...
• comparing single cell RNA-seq and bulk RNA-seq results
  Hi everyone, I have bulk cell RNA-seq data from a rare cell type, and would like to use the exist...
• How to compare multiple microarray samples of small RNA expression from myeloid tissue with small RNA-seq
  Hi I have a microRNA expression data from a cancer patient's myeloid cells (no replicate) . I wan...
• Strategy For Rna Seq Normalization Across Different Tissue Samples With Different Cell Density.
  Hello All, This is another question about RNA Seq data normalization. Often, I have read papers ...
• How to get the differentially expressed genes in cancer cell lines
  I'm wondering is there a way to calculate the differentially expressed genes in cancer cell lines...
• How to assess extent of cell-type admixtures from bulk RNA-seq data for a single tissue?
  We have bulk RNA-seq data from different samples (1 single tissue), treated vs control, (2 to 3 r...
• Cell Type Composition In A Tissue Based On Gene Marker Expression
  I am not sure if the following would even make sense.... Tissues are composed of composite cell...
• Different Copy Number Alteration Results from Fresh Frozen Tissue Sample and matched Cell Line
  Hi everyone, I have whole genome sequencing data and I am trying to analyse copy number alterat...
• What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
  Hi there, I am working on some single-cell RNA-Seq samples and wondering what the difference bet...
• chip-seq (histone modifications) and rna-seq data for benchmarking
  I am investigating the differentially expressed genes and the histone modifications and for that ...
• RNA seq differential analysis for multi samples and multi replicates
  Hi All, I am having a set of 50 genes. I have downloaded the GTex RNA Seq data (both read count ...
• Identify the isoform of a transcript using RNA Seq data
  Hi, my favorite transcript is supposed to consist of 12 exons (it was only described in germ cel...
• microarray data analysis
  Hi I was analyzing dataset consists of both cancer cell lines and tissue samples. Do i need to f...
• DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
  Why is there an oblique line in my MA picture, which happened before, what caused this? My sample...
• What is the correct way of using GTEx, CCLE and HPA data?
  I asked this today on Research Gate, but I'm not receiving any response there... Maybe you folks ...
• SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small RNA sequencing data processing, analysis, and comparison with DASHR and ENCODE >180 tissues/cell types
  A web server for interactive analysis and a set of scripts and modules for small RNA-seq, short ...
• Gene expression comparison of Cancer and Normal tissue
  I have a basic question about RNAseq normalisation while comparing cancer/tumor tissue expression...
• How many cell lines for RNA-seq comparisons?
  I have 2 cell lines which show a difference in growth advantage when implanted in immunocompromis...
• Cell Line/Tissue Comparison between Fantom5 and Roadmap
  Hi everyone, Have you ever compared the tissue/cell line between Fantom5 and roadmap. What I nee...
• Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)
  I know following resources which have DNAse-seq and mRNA-seq data for different tissue/cell sampl...
• T cell diversity in tumor. tumor tissue or blood? mix cell bulk or sorted T cell?
  My goal is to evaluate the T cell diversity in TIL infiltrates. However, most of the TCR-Seq uses...