Hi folks
I want to get the replication time value for every 100 kb bin size in the cancer cell line.
In Encode(/University of Washington), there are seven types of data available to download: Alignments, peaks, Percentage-normalized Signal, Raw data, Summed Densities, Valleys, Wavelet-smoothed Signal.
When I was trying to get the value from the Peaks data(.bed), there were values in only few limited regions.
Now I'm trying to get it from the bam format data but I don't know how to calculate the replication time value exactly, I only have a vague concept of how to do it.
Please let me know if you have any ideas.
Thanks