Where can I download mitochondrial ancestral alleles?
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Entering edit mode
6.8 years ago

This question is related to my question on where to download MT haplogroups:

Where can I download a list of mtDNA haplogroup mutations?

And this question on download ancestral alleles:

1000 Genomes Snps' Ancestral Allele

My question is where I can donwload mitochondrial ancestral alleles? I can't seem to find that information anywhere.

mt mtDNA mitochondrial ancestral allele ancestral • 1.4k views
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Entering edit mode
6.8 years ago
Manvendra Singh ★ 2.2k

I was doing it before 3 years, then I use to do it manually by listing mutations of mtDNA sequence and mapping them onto phylotree,

which is here  

you can try comparing your sequences with the one on mitomap

there you get sequences of each haplogroup, just call SNPs to get haplogroup specific SNPs,

but then keep in mind that many haplogroups share common SNPs also.

Thats why, I used to do it manually.

 

hth

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