Question: R package for Bayesian phylogenetics
0
gravatar for confusedious
5.4 years ago by
confusedious420
Australia
confusedious420 wrote:

I am currently on the hunt for a good R package for performing BI phylogenetics. I use 'phangorn' for MP and ML and I am very happy with this package, but would like to produce some BI trees for the sake of comparison.

Any advice would be appreciated.

phylogenetics R • 2.5k views
ADD COMMENTlink modified 5.4 years ago by David W4.7k • written 5.4 years ago by confusedious420
1
gravatar for David W
5.4 years ago by
David W4.7k
New Zealand
David W4.7k wrote:

There aren't really any:

 http://cran.r-project.org/web/views/Phylogenetics.html

R is great for many things, by MCMC is not one of them, so I doubt anyone will be write one :)

ADD COMMENTlink modified 5.4 years ago • written 5.4 years ago by David W4.7k

Ah, such a shame. 'Phangorn' has a great tree comparison tool and I hoped to do some three way comparisons between a method I'm working on, ML and BI. I can do BI with the 'MrBayes' plugin in 'Geneious' so I guess I'll just do that and then read in a newick of the resultant tree to R.

Thank you for the reply.

ADD REPLYlink written 5.4 years ago by confusedious420
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