Question: Handling heterozygosity with VariScan
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gravatar for jsgounot
4.2 years ago by
jsgounot130
European Union
jsgounot130 wrote:

Hi,

I'm currently trying to extract basic informations from my data with VariScan (Pi, theta, tajima ...). Currently I export my data in phylip format and run it with the software, but it looks like it's not possible to use this format for unphased SNPs. I'm just wondering if there is a trick or if I absolutely need to convert my data in an other format like HapMap. 

Thanks a lot.

snp • 1.0k views
ADD COMMENTlink modified 17 months ago by Biostar ♦♦ 20 • written 4.2 years ago by jsgounot130
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