Question: How to evalute homology models of Multi - domain protein based on multiple template?
1
gravatar for joice624
4.8 years ago by
joice62410
United States
joice62410 wrote:

Hi, I built a homology model of a protein with multiple domains and the templates i used each contain only fragments of the protein obtained from homology modeling.

Now I want to evaluate the stereo chemical quality of the homology model, and compare the values to the templates. but since none of the template contain the whole sequence, i wonder if it make sense to truncate the protein into different domains and only compare the number for the matching domains to the domain? 

Thanks

Joyce

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