Hi all,
When I have tried to install package dependencies of WGCNA, I have got the following error in the step of loading GO.db package after download completed:
biocLite(c("GO.db")) BioC_mirror: http://bioconductor.org Using Bioconductor version 2.13 (BiocInstaller 1.12.1), R version 3.0.2. Installing package(s) 'GO.db' trying URL 'http://bioconductor.org/packages/2.13/data/annotation/src/contrib/GO.db_2.10.1.tar.gz' Content type 'application/x-gzip' length 26094175 bytes (24.9 Mb) opened URL ================================================== downloaded 24.9 Mb * installing *source* package âGO.dbâ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'GO.db', details: call: match.arg(synchronous, c("off", "normal", "full")) error: 'arg' must be NULL or a character vector Error: loading failed Execution halted ERROR: loading failed * removing â/home/zmousavian/R/x86_64-pc-linux-gnu-library/3.0/GO.dbâ The downloaded source packages are in â/tmp/RtmpBDs1Tq/downloaded_packagesâ Warning messages: 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : installation of package âGO.dbâ had non-zero exit status 2: installed directory not writable, cannot update packages 'colorspace', 'lattice', 'mgcv', 'survival'
Can anyone help me to solve this problem?
Thanks