I have carried out SHAPEIT to phase some haplotypes. The output files from SHAPEIT are .haps and .sample. SHAPEIT mentions as HAPS/SAMPLE file (seen here: http://www.shapeit.fr/pages/m02_formats/hapssample.html )which I need in order to carry out other bioinformatic techniques.
Is there a way to create this file from the ones i already have? I have no idea how this file could be created?