I am trying to assemble sequences with phrap, for some of the sequences I have the associated quality file but not all of them. I have created a fasta file with all my sequences and another file with all the quality information but phrap is not happy as I have some missing quality information for a couple of the sequences:
FATAL ERROR: Inconsistency between quality file and sequence file
Is there a way I can phrap sequences together even if I have some missing quality information for some of the sequences? How?