the topGO package appears to have a function showSigOfNodes, which plots the GO graph and highlights the enriched terms. I have done my GO enrichment analysis with GOseq and that packages doesn't provide a plot function like that. Is there any way the function from topGO can be made to accept the data from GOseq?
If not, what else should be used? I know REVIGO and it's nice but it shows graphs based on semantic similarity, not the GO hierarchy.
Is there anything else available in R/bioconductor?