Question: Obtaining A Genomic Range From A Given Genbank'S Accession Number With Ucsc
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gravatar for Anima Mundi
7.4 years ago by
Anima Mundi2.4k
Italy
Anima Mundi2.4k wrote:

Hi, the UCSC Genome Browser allows to obtain FASTAs of the regulatory sequences of a given gene starting from its GenBank's accession number. I would rather prefer to obtain as output the exact genomic range and I would like to know how. Should I use UCSC Table Browser? Eventually, how?

In addition, if for example I took the sole intronic regions of a given gene, I would like to obtain a list of ranges each corresponding to a single intron, instead of a single range (which, naturally, would include the whole strand from the 5' extremity of the first intron to the 3' extremity of the last one).

genome fasta ucsc • 1.6k views
ADD COMMENTlink modified 5.0 years ago by Biostar ♦♦ 20 • written 7.4 years ago by Anima Mundi2.4k
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