1) How to compare ASTRAL SCOP genetic domain sequences based on PDB SEQRES and PDB ATOM records?My aim is to find the missing residues from these records. I know that I have to do alignment using these sequences. How can I do alignment and how can I find missing residues using Biopython?
2) ClustalW takes a group of sequences and performs all pairwise alignments. It then calculates a similarity matrix, which it analyzes to see how distantly related the groups of sequences are. How can I perform these steps (pairwise sequence alignment, distance matrix, hierarchial clustering, dendrogram ) in Biopython?