Question: Lositan does not run simulations and does not read the right number of loci
1
gravatar for Hanan
4.7 years ago by
Hanan70
Tel Aviv University
Hanan70 wrote:

Hello

I am running Lositan for the first time. Running with example file is OK.  My file contains 96 individuals in 2 populations with 2278 loci. When I load the file I see that it reads 2622 loci and 2 populations but does not do the Fst/He calculations. When I press run, I see at the top a yellow banner saying simulations are running but nothing else happens. I use Oracle java version 8_40 on Ubuntu 14.04 server with 16 cores and 128 RAM.  I have tested the input file with R diveRsity package and it reads it OK. The file is in format of all loci are in the same line separated by comma. The  inputfile can be found in: https://www.dropbox.com/s/5hftly00y1ascpt/popgene.csv?dl=0.

Any help would be appreciated

Thank you

Hanan 

lositan • 1.2k views
ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by Hanan70

You mean lositan, no? Not "lostian".I've corrected it now.

ADD REPLYlink modified 4.7 years ago • written 4.7 years ago by RamRS24k
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