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• minimum free energy
  hello, i am working in the field of miRNA, i want to know what should be the upper limit and lowe...
• miRNA binding prediction of SNPs
  Looking into effects of SNPs on miRNA-binding. Looking for a tool that allows input of mRNA seque...
• Free binding energy in RNA-target
  Hi, Normally in RNA structure prediction, they will give the free energy for seed and binding si...
• Unexpected Molecular Dynamics results
  Dear all,  I did MD simulations analysis for a drug resistant mutation. I have Two form of prote...
• Binding Free Energy
  Hi to all, How much free energy needed for protein-protein or protein-drug interaction? How to id...
• primer3-py Gibbs free energy
  I'm using primer3-py0.3.0, the Python bindings for Primer3. I have a sequence "S" that is my cand...
• Molecular docking, estimating free energies of binding, and a tutorial for how to use AutoDock's semi-empirical force field
  Discussions and questions about methods, approaches, and tools for estimating (relative) free bin...
• Relation between binding energy and activation energy
  Hello all, I have performed enzyme- substrate and enzyme-product docking and got respective bindi...
• How Does Mirnas Bind A Transcript?
  Hi, all: i am confused at how does a miRNA bind a transcript and cause it degrading ? Is the miRN...
• Promoter - Transcription factor binding energy calculator
  hi,  i need some help regarding some online servers or softwares available to find binding energ...
• miRNAs vs Target Genes
  Hey All           I have some Questions and I would appreciate your answers I have list of diff...
• Membrane partitioning free energy
  What is membrane partitioning free energy ? Can we look for difference in free energy upon partit...
• r for RNA/RNA hybrid free energy
  Hi everyone, I was trying to calculate the hybrid free energy between two RNA sequences. Is ther...
• RNAHybrid -minimum free energy, structure and alignment query
  I am trying to use BiBiServ-RNAHybrid but am encountering certain problems.KIndly help me asap. ...
• Binding energy and binding affinity issue in docking.how to solve?
  I have been doing docking for a compound with a protein using autodock but I am getting the resul...
• What is a good binding energy in AutoDock?
  I performed a protein ligand docking and got a binding energy of -2.74 kCal/mol. This is the best...
• How to calculate free energy of folding by mfold and deltaG of binding by RNAcofold for siRNA
  I've been trying to design siRNA for a virus. So I am following the steps from an already publish...
• Energy Calculation
  hi biostar i would like to know whether there is any java code available to find the free energy...
• How to map miRNA to transcripts of targeting genes ?
  Hi,   I have set of experimentally validated miRNA-gene interactions. I jut have information ab...
• miRNA binding detection from RNA-seq reads
  Hello, I have a question regarding miRNA binding to mRNA. If a mRNA binds with miRNA, it will fo...