how to generate setID file?
1
0
Entering edit mode
6.4 years ago
la.sy • 0

i want to generate setID file for SKAT(r package)

so i use "annovar"

but i don't know how to use annovar after i read guide

could anyone provide me some suggestion

annovar • 2.2k views
ADD COMMENT
0
Entering edit mode

what exactly are you not understanding ? The annovar documentation is quite straight forward. Alternatively, try wANNOVAR

ADD REPLY
0
Entering edit mode
10 weeks ago

I know this is for a long time, but I found till now there is no clear answer

so to use annovar firstly you download annovar from this link https://annovar.openbioinformatics.org/en/latest/ and then in your Linux unzip the file tar xvfz annovar.latest.tar.gz then module load annovar then run this annotate_variation.pl -out ex1 -build hg19 example/ex1.avinput humandb/ as an example to understand what is happening here, all the examples files will be downloaded automatically

marwa

ADD COMMENT

Login before adding your answer.

Traffic: 1565 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6