Tool: minfi package: plotBetasByType, GenomicRatioSet-clas
gravatar for kawaguca
3.9 years ago by
kawaguca0 wrote:

I have the methylation data of human methylation450k.

The IDAT files were read with the minfi package.

Then preprocessFunnorm(RGChannelSet) was done.

I tried to plot the overall density distiribution on beta values and that of the I and II probe types  using the plotBetasByType function of the package.

But the function can be used only for  a MethylSet or a matrix.

Is there a way to use the function on the GenomicRatioSet-class ?


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