Entering edit mode
9.1 years ago
kawaguca
•
0
I have the methylation data of human methylation450k.
The IDAT files were read with the minfi package. Then preprocessFunnorm(RGChannelSet)
was done. I tried to plot the overall density distribution on beta values and that of the I and II probe types using the plotBetasByType
function of the package. But the function can be used only for a MethylSet
or a matrix. Is there a way to use the function on the GenomicRatioSet-class
?
Thanks