Question: Can I get Multiple Sequence Alignments from Satsuma Alignments
gravatar for ben.ward
4.1 years ago by
United Kingdom
ben.ward30 wrote:

I have several files from a colleague that were output by Satsuma. Each file contains a different genome (query) aligned to the same reference.

The format of satsuma output files follows the form defined here. The file contains these human readable alignments. But also a file can be output which contains data in a tabula format, for example here.

Is it possible to get a multiple alignment from this output, or otherwise convert it to a form that could be used in a multiple sequence alignment? The alternative is doing a MSA from scratch.









alignment sequence genome • 747 views
ADD COMMENTlink modified 4.0 years ago by Biostar ♦♦ 20 • written 4.1 years ago by ben.ward30
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