Apologies if this is a repeated question.
I have an annotated genome (RAST) but I am missing some reactions. The bacterium I am studying degrades a known toxin to unknown compoundss, but this pathway is not present in the annotation.
KEGG’s PathPred starting from a similar compound returned 50s of possible reactions. Now, how to search in my genome for those reactions and possibly list similarities?
Is there any other way to annotate a unknown degradation pathways?
Thanks in advance.