I am looking for a method of analyzing the alternative splicing and/or different f transcript lengths of a specific gene in the mouse/human genomes.
I will download some published RNA-Seq data to do that.
What I would like to know is whether I need to do an analysis for the complete genome, or can I concentrate only on the specific region?
We presume that the gene has an alternative splice variants of two (or more ???) different length and would like to isolate this area and work only with it.
Is there any software to do so?
Can someone recommend a data base and/or software to do this kind of analysis?
Thanks for the help, Assa