Question: Local Pairwise alignment Blast
2
gravatar for farshidshirafkan
4.0 years ago by
farshidshirafkan10 wrote:

How can I do Local Pairwise alignment Blast for 2 following sequences through NCBI:

1- RBP

2-B-Lactoglobulin

Then do it by lower Gap Penalties ?

blast alignment gene ncbi • 1.6k views
ADD COMMENTlink modified 4.0 years ago by Spitshine640 • written 4.0 years ago by farshidshirafkan10
2

What is the context? This looks suspiciously like a designed question (for interviews or assignments or exams), unfortunately.

ADD REPLYlink written 4.0 years ago by RamRS21k
0
gravatar for Spitshine
4.0 years ago by
Spitshine640
Esch-sur-Alzette, Luxembourg
Spitshine640 wrote:

Obtain the sequences as DNA or protein as you require it.

Go to the NCBI website http://1.usa.gov/1yIW9fq

The gap-open and extension penalties can be changed in the "Alignment parameters" section, which you can expand below the submit ("BLAST") button.

 

ADD COMMENTlink written 4.0 years ago by Spitshine640
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