Question: Is Human_G1K_V37.Fasta Hg19?
2
gravatar for Bioscientist
8.7 years ago by
Bioscientist1.7k
Bioscientist1.7k wrote:

Recently got humang1kv37.fasta file Just curious if this is hg19 sequence? Because hg19 is also called GRCh37. What does "g1k" mean?

If not, from where can I get the chromosome sequence for humang1kv37.fasta?

thanks

hg • 10k views
ADD COMMENTlink written 8.7 years ago by Bioscientist1.7k
2
gravatar for Wen.Huang
8.7 years ago by
Wen.Huang1.2k
Wen.Huang1.2k wrote:

http://www.1000genomes.org/category/assembly

g1k = 1000 genomes

ADD COMMENTlink written 8.7 years ago by Wen.Huang1.2k
3

It is one version of hg19, but not the only one. From the linked page: "For the phase1 analysis we mapped to GRCh37. Our fasta file which can be found here called human_g1k_v37.fasta.gz, it contains the autosomes, X, Y and MT but no haplotype sequence or EBV"

ADD REPLYlink written 8.7 years ago by Chris Miller21k

thanks! so human_g1k_v37 = hg19 ?

ADD REPLYlink written 8.7 years ago by Bioscientist1.7k

human_g1k_v37 is a version of hg19

ADD REPLYlink written 2.7 years ago by bluemonster080840
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