Error with dsk2ascii

Question

[Nico]

Hi!

I try to use DSK and dsk2ascii. I compiled with cmake and make, no error. I ran DSK with no problem:

./dsk -nb-cores 6 -file ~/workspace/Meteor/F1.fna -kmer-size 33 -max-memory 8192 -out ./test/bla

But when I try to use dsk2ascii, I have this error:

../utils/dsk2ascii -file bla.h5 -out res.txt
EXCEPTION: Type 'LargeInt<1>' has too low precision (64 bits) for the required 33 kmer size

Any idea?

I am on a debian 64bits.

Cheers,

Nico Maillet

Answer 1

[edrezen]

This problem should have been solved with the last version of dsk you can find here : http://gatb-tools.gforge.inria.fr/versions/src/dsk-2.0.3-Source.tar.gz

Could you tell me if your problem is solved with this version ?

[Nico]

That is working!

Thanks a lot and sorry for this bad version.

Nico