Question: Error with dsk2ascii
0
gravatar for Nico
2.6 years ago by
Nico180
France
Nico180 wrote:

Hi!

I try to use DSK and dsk2ascii.

I compiled with cmake and make, no error.

I ran DSK with no problem:

./dsk -nb-cores 6 -file ~/workspace/Meteor/F1.fna -kmer-size 33 -max-memory 8192 -out ./test/bla

But when I try to use dsk2ascii, I have this error:

../utils/dsk2ascii -file bla.h5 -out res.txt
EXCEPTION: Type 'LargeInt<1>' has too low precision (64 bits) for the required 33 kmer size

 

Any idea?

I am on a debian 64bits.

 

Cheers,

Nico Maillet

dsk • 546 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by Nico180
1
gravatar for edrezen
2.6 years ago by
edrezen690
France
edrezen690 wrote:

This problem should have been solved with the last version of dsk you can find here : http://gatb-tools.gforge.inria.fr/versions/src/dsk-2.0.3-Source.tar.gz

Could you tell me if your problem is solved with this version ?

ADD COMMENTlink written 2.6 years ago by edrezen690
0
gravatar for Nico
2.6 years ago by
Nico180
France
Nico180 wrote:

That is working!

Thanks a lot and sorry for this bad version...

 

Nico

ADD COMMENTlink written 2.6 years ago by Nico180
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