Question: DSK ignores abundance-max
0
gravatar for oiz67311
24 months ago by
oiz673110
Germany
oiz673110 wrote:

Hi everyone!

I try to use dsk to only provide a list of kmers within a specific abundance range.

The -abundance-min parameter works fine, but the -abundance-max parameter does not seem to work.

For example, if I use

"./dsk -file somefile -kmer-size 21 -abundance-min 1 -abundance-max 5"

the configuration output at the end says:

dsk                                     
        config                                  
            kmer_size                                : 21
            mini_size                                : 8
            solidity_kind                            : sum
            abundance_min                            : 1
            abundance_max                            : -1

 

I have tested this on version 2.0.2 and 2.0.3.

 

Cheers and thanks in advance.

 

dsk minia • 556 views
ADD COMMENTlink modified 24 months ago by edrezen670 • written 24 months ago by oiz673110
2
gravatar for edrezen
24 months ago by
edrezen670
France
edrezen670 wrote:

Oh, thanks, this parameter was not well used in dsk.

I just corrected the issue in the new version 2.0.4 you can find here.

ADD COMMENTlink written 24 months ago by edrezen670

Thank you very much for your fast support! The new version works fine.

ADD REPLYlink written 24 months ago by oiz673110
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