Question: DSK ignores abundance-max
0
gravatar for oiz67311
2.2 years ago by
oiz673110
Germany
oiz673110 wrote:

Hi everyone!

I try to use dsk to only provide a list of kmers within a specific abundance range.

The -abundance-min parameter works fine, but the -abundance-max parameter does not seem to work.

For example, if I use

"./dsk -file somefile -kmer-size 21 -abundance-min 1 -abundance-max 5"

the configuration output at the end says:

dsk                                     
        config                                  
            kmer_size                                : 21
            mini_size                                : 8
            solidity_kind                            : sum
            abundance_min                            : 1
            abundance_max                            : -1

 

I have tested this on version 2.0.2 and 2.0.3.

 

Cheers and thanks in advance.

 

dsk minia • 630 views
ADD COMMENTlink modified 2.2 years ago by edrezen680 • written 2.2 years ago by oiz673110
2
gravatar for edrezen
2.2 years ago by
edrezen680
France
edrezen680 wrote:

Oh, thanks, this parameter was not well used in dsk.

I just corrected the issue in the new version 2.0.4 you can find here.

ADD COMMENTlink written 2.2 years ago by edrezen680

Thank you very much for your fast support! The new version works fine.

ADD REPLYlink written 2.2 years ago by oiz673110
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1263 users visited in the last hour