Entering edit mode
9.0 years ago
jeremycfd
•
0
Hello all,
After a fresh install of kmergenie, I've attempted to run the program on a couple of different files of different sizes, all to no success. Essentially it asks me to run make check, but as far as I can tell make check returns no errors. Any insights on how to get this working?
./kmergenie ELJC31_pc001_1_final.fastq --diploid
running histogram estimation
Linear estimation: ~96 M distinct 71-mers are in the reads
K-mer sampling: 1/18
| processing |
[going to estimate histograms for values of k: 121 111 101 91 81 71 61 51 41 31 21
------------------------------------------------------------------------------------------------------------------------Total time Wallclock 1144.9343 s
fitting model to histograms to estimate best k
could not fit histograms-k101.histo
could not fit histograms-k31.histo
could not fit histograms-k121.histo
could not fit histograms-k41.histo
could not fit histograms-k111.histo
could not fit histograms-k21.histo
could not fit histograms-k51.histo
could not fit histograms-k81.histo
could not fit histograms-k71.histo
could not fit histograms-k61.histo
could not fit histograms-k91.histo
could not predict a best k value
Execution of decide failed (return code 0). If this is a fresh Kmergenie install, try running 'make check'.
make check
scripts/test_install
Testing presence of specialk....
OK
Testing presence of Rscript....
R scripting front-end version 3.0.2 (2013-09-25)
OK
Testing basic Rscript functionality....
Rscript --no-init-file -e 'rnorm(1)'
[1] "rnorm(1)"
OK
Testing a simple KmerGenie example....
OK
Test successful. KmerGenie is ready, type `./kmergenie`.
