plotting exons, cds and transcript for a specific gene
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Entering edit mode
6.7 years ago

hi all

I have a project I have to Implement a function in R that receive a symbol of gene and plot all of the exons and transcript and cds about that gene.

I can't understand the mean of plotting exons and ... 

plot gene exon cds transcripts • 3.1k views
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Entering edit mode
6.7 years ago
PoGibas 5.0k

The meaning of plotting exons is when you plot genomic coordinates along X-axis (for example chr1 from 1000bp to 2000bp) and draw different gene elements above (for example: exon-intron-exon).

 

You can easily draw such graphs in R when your input is only gene ID using GenomeGraphs take a look at: 2.1 Plotting a Gene.

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5.3 years ago
hgarza • 0

Hi you can use genoPlotR to draw exon-intron-exon junctions and make comparissions between genes and genomes. You can add phylogenetic analysis too

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