Counting features - the example in vignette for summarizeOverlap and HTseq
Entering edit mode
7.9 years ago
Pfs ▴ 550

I am having trouble to understand the results of the counting in SummarizeOverlap vignette, which implements the methods in HTSeq.

Has anybody tried to work the example out manually? It may sound tedious, but I wanted to make sure I understand how to interpret the results.

For example, why the results for method = Union report 1 read for feature C? The read also overlap with feature G, so it should be discarded.

I could paste the code, if that helps. The vignette is available here:

RNA-Seq • 1.7k views

Login before adding your answer.

Traffic: 2472 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6