Question: pulling out subset in cummeRbund
0
gravatar for mfahim
4.0 years ago by
mfahim10
Korea, Republic Of
mfahim10 wrote:

Hello Maestros

I found this wonderful intact and working script.

gene_diff_data  <- diffData(genes(cuff_data))

sig_gene_data  <- subset(gene_diff_data, (significant ==  'yes'))

nrow(sig_gene_data)

How do I modify it to get a comparison between two samples.. I have a database of 8 samples in cummeRbund.

How do I make a table out of it.. and any direct script for Venndiagram?

For WT, m1, m2 and m1m2 at two different temperature (23 and 27), how do I make a venndiagram to show differentially expressed genes, CDS, isoforms and TSS?

 

Cheers..

cummerbund • 1.3k views
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