I found this wonderful intact and working script.
gene_diff_data <- diffData(genes(cuff_data))
sig_gene_data <- subset(gene_diff_data, (significant == 'yes'))
How do I modify it to get a comparison between two samples.. I have a database of 8 samples in cummeRbund.
How do I make a table out of it.. and any direct script for Venndiagram?
For WT, m1, m2 and m1m2 at two different temperature (23 and 27), how do I make a venndiagram to show differentially expressed genes, CDS, isoforms and TSS?