Question: Resources for genome-wide maps of transcription factor binding sites?
1
gravatar for Alexander Skates
4.0 years ago by
United Kingdom
Alexander Skates340 wrote:

I'm looking for resources for transcription factor binding sites, ideally in BED file formats with the coordinates of the beginning and end of each binding site. I know about Cistrome DB (http://cistrome.org/NR_Cistrome/Cistrome.html) and I've also seen hmChIP (http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl), but I was hoping for some more.

I'd seen numerous mentions of databases like JASPAR, however whilst this provides maps of the binding sites in BED format as requested, it says nothing about the origin of these maps, e.g. cell type, treatment, etc.

ADD COMMENTlink modified 3.3 years ago by Biostar ♦♦ 20 • written 4.0 years ago by Alexander Skates340

See the  publication  at https://purr.purdue.edu/publications/1719 for a bed file listing  potential TFBSs for hg19

ADD REPLYlink written 3.9 years ago by go4science0
1
gravatar for UnivStudent
4.0 years ago by
UnivStudent380
Canada
UnivStudent380 wrote:

There is also ReMap which merged all ENCODE chip-seq data with public ChIP-seq data from the literature. Paper: http://nar.oxfordjournals.org/content/43/4/e27

ADD COMMENTlink written 4.0 years ago by UnivStudent380
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 932 users visited in the last hour