I would like to extract the genbank or (embl) annotation file from genomes sequenced at JGI, which should serve as input for another tool in my analysis pipeline. At JGI you can download the annotation of the genomes in gff format, and you can get the genome or CDS in fasta format.
So my question is...:
Is there any way of retrieving the genbank file from jgi or do I have to use a conversion tool to generate the genbank file myself from the gff and fasta files.
If so, which conversion tool would you recommend (I guess people must have had this problem before, so I hope I don’t have make a python converter myself)