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7.9 years ago
Maria333 ▴ 20

Hi,

I was just trying to run my typical script which downloaded a lot of regions I wanted before, but it stopped all of a sudden presenting the following errors at two different times:

1)

227 Entering Passive Mode (193,62,192,8,185,217).


2)

EOF marker is absent. The input is probably truncated.


Does anyone have any idea? The strange thing is that each of the times I ran the code, it presented as errors different bam files which were downloaded before. I looked online but everyone says I should ignore these kind of errors..

Any help would be really appreciated.

Thank you

bam samtools • 2.0k views
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You'll always get the EOF message with FTP, it's hard-coded. I've been meaning to make a pull request to prevent that in fact...

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Thank you..So do you suggest that I should continue running the code until it's fixed?

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At least for (2) yes. I don't remember (1) also occurring, though I'll check real quick.

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I don't get (1). So perhaps you have a networking issue or are using a different version. Make sure you're using the most recent version (1.2 or 1.2.1 I think).

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Thank you for that. It seems everything's fine with the code. Don't know what's happening.

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